J3_5V93_042

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGG*CUAGAG*CUGACG

Length

15 nucleotides

Bulged bases

5V93|1|a|A|644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V93|1|a|U|577
5V93|1|a|G|578
5V93|1|a|G|579
*
5V93|1|a|C|642
5V93|1|a|U|643
5V93|1|a|A|644
5V93|1|a|G|645
5V93|1|a|A|646
5V93|1|a|G|647
*
5V93|1|a|C|741
5V93|1|a|U|742
5V93|1|a|G|743
5V93|1|a|A|744
5V93|1|a|C|745
5V93|1|a|G|746

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain o

30S ribosomal protein S15

Chain q

30S ribosomal protein S17