J3_5V93_055

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGU*AGACUGC*GAGGAAGGUG

Length

20 nucleotides

Bulged bases

5V93|1|a|U|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5V93_055 not in the Motif Atlas

Homologous match to J3_5J7L_054

Geometric discrepancy: 0.2292

The information below is about J3_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5V93|1|a|U|1107
5V93|1|a|G|1108
5V93|1|a|U|1109
*
5V93|1|a|A|1147
5V93|1|a|G|1148
5V93|1|a|A|1149
5V93|1|a|C|1150
5V93|1|a|U|1151
5V93|1|a|G|1152
5V93|1|a|C|1153
*
5V93|1|a|G|1167
5V93|1|a|A|1168
5V93|1|a|G|1169
5V93|1|a|G|1170
5V93|1|a|A|1171
5V93|1|a|A|1172
5V93|1|a|G|1173
5V93|1|a|G|1174
5V93|1|a|U|1175
5V93|1|a|G|1176

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14 type Z