J3_5VPO_021

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

5VPO|1|RA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_021 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0578

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5VPO|1|RA|C|1306
5VPO|1|RA|A|1307
5VPO|1|RA|A|1308
5VPO|1|RA|G|1309
*
5VPO|1|RA|C|1605
5VPO|1|RA|G|1606
5VPO|1|RA|C|1607
5VPO|1|RA|A|1608
5VPO|1|RA|A|1609
5VPO|1|RA|A|1610
5VPO|1|RA|C|1611
*
5VPO|1|RA|G|1620
5VPO|1|RA|U|1621
5VPO|1|RA|G|1622

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34