3D structure

PDB id
5VPO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The 70S P-site ASL SufA6 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.34 Å

Loop

Sequence
CC*GUGGAU*AAUCG
Length
13 nucleotides
Bulged bases
5VPO|1|RA|G|2833, 5VPO|1|RA|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5VPO_026 not in the Motif Atlas
Homologous match to J3_7RQB_014
Geometric discrepancy: 0.0816
The information below is about J3_7RQB_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_95952.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5VPO|1|RA|C|2814
5VPO|1|RA|C|2815
*
5VPO|1|RA|G|2831
5VPO|1|RA|U|2832
5VPO|1|RA|G|2833
5VPO|1|RA|G|2834
5VPO|1|RA|A|2835
5VPO|1|RA|U|2836
*
5VPO|1|RA|A|2882
5VPO|1|RA|A|2883
5VPO|1|RA|U|2884
5VPO|1|RA|C|2885
5VPO|1|RA|G|2886

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RR
50S ribosomal protein L17
Chain RT
50S ribosomal protein L19

Coloring options:


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