J3_5VPO_032

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPO_032 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1692

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5VPO|1|XA|C|936
5VPO|1|XA|A|937
5VPO|1|XA|A|938
5VPO|1|XA|G|939
*
5VPO|1|XA|C|1344
5VPO|1|XA|U|1345
5VPO|1|XA|A|1346
5VPO|1|XA|G|1347
5VPO|1|XA|U|1348
5VPO|1|XA|A|1349
5VPO|1|XA|A|1350
*
5VPO|1|XA|U|1372
5VPO|1|XA|G|1373
5VPO|1|XA|A|1374
5VPO|1|XA|A|1375
5VPO|1|XA|U|1376
5VPO|1|XA|A|1377
5VPO|1|XA|C|1378
5VPO|1|XA|G|1379

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9