J3_5VPO_059

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CGC*GGACUGCC*GGAGGAAGGAG

Length

22 nucleotides

Bulged bases

5VPO|1|QA|C|1158, 5VPO|1|QA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPO|1|QA|C|1116
5VPO|1|QA|G|1117
5VPO|1|QA|C|1118
*
5VPO|1|QA|G|1155
5VPO|1|QA|G|1156
5VPO|1|QA|A|1157
5VPO|1|QA|C|1158
5VPO|1|QA|U|1159
5VPO|1|QA|G|1160
5VPO|1|QA|C|1161
5VPO|1|QA|C|1162
*
5VPO|1|QA|G|1174
5VPO|1|QA|G|1175
5VPO|1|QA|A|1176
5VPO|1|QA|G|1177
5VPO|1|QA|G|1178
5VPO|1|QA|A|1179
5VPO|1|QA|A|1180
5VPO|1|QA|G|1181
5VPO|1|QA|G|1182
5VPO|1|QA|A|1183
5VPO|1|QA|G|1184

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QI

30S ribosomal protein S9

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z