J3_5VPO_066
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5VPO|1|RA|A|2388, 5VPO|1|RA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPO_066 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0947
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5VPO|1|RA|G|2282
5VPO|1|RA|C|2283
5VPO|1|RA|C|2284
*
5VPO|1|RA|G|2384
5VPO|1|RA|C|2385
5VPO|1|RA|C|2386
5VPO|1|RA|U|2387
5VPO|1|RA|A|2388
5VPO|1|RA|G|2389
5VPO|1|RA|U|2390
5VPO|1|RA|G|2391
5VPO|1|RA|A|2392
5VPO|1|RA|A|2393
5VPO|1|RA|C|2394
5VPO|1|RA|C|2395
*
5VPO|1|RA|G|2421
5VPO|1|RA|A|2422
5VPO|1|RA|U|2423
5VPO|1|RA|C|2424
5VPO|1|RA|A|2425
5VPO|1|RA|A|2426
5VPO|1|RA|C|2427
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R0
- 50S ribosomal protein L27
- Chain R1
- 50S ribosomal protein L28
- Chain R6
- 50S ribosomal protein L33
- Chain R8
- 50S ribosomal protein L35
- Chain RP
- 50S ribosomal protein L15
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