J3_5VPO_080

3D structure

PDB id

5VPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site ASL SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.34 Å

Loop

Sequence

CACG*CGGUAAG*CGAGG

Length

16 nucleotides

Bulged bases

5VPO|1|YA|A|2790, 5VPO|1|YA|C|2791

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPO|1|YA|C|2789
5VPO|1|YA|A|2790
5VPO|1|YA|C|2791
5VPO|1|YA|G|2792
*
5VPO|1|YA|C|2804
5VPO|1|YA|G|2805
5VPO|1|YA|G|2807
5VPO|1|YA|U|2808
5VPO|1|YA|A|2809
5VPO|1|YA|A|2810
5VPO|1|YA|G|2811
*
5VPO|1|YA|C|2889
5VPO|1|YA|G|2891
5VPO|1|YA|A|2892
5VPO|1|YA|G|2893
5VPO|1|YA|G|2894

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YW

50S ribosomal protein L22