J3_5VPP_008

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GGAAC*GGUGC*GAGCC

Length

15 nucleotides

Bulged bases

5VPP|1|QA|U|1025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|QA|G|1002
5VPP|1|QA|G|1003
5VPP|1|QA|A|1004
5VPP|1|QA|A|1005
5VPP|1|QA|C|1006
*
5VPP|1|QA|G|1023
5VPP|1|QA|G|1024
5VPP|1|QA|U|1025
5VPP|1|QA|G|1026
5VPP|1|QA|C|1027
*
5VPP|1|QA|G|1034
5VPP|1|QA|A|1035
5VPP|1|QA|G|1036
5VPP|1|QA|C|1037
5VPP|1|QA|C|1038

Current chains

Chain QA

16S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA