J3_5VPP_015

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UAAAC*GGGUG*CG*GC*G

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|RA|U|269
5VPP|1|RA|A|270
5VPP|1|RA|A|270|||A
5VPP|1|RA|A|270|||B
5VPP|1|RA|C|270|||C
*
5VPP|1|RA|G|270|||W
5VPP|1|RA|G|270|||X
5VPP|1|RA|G|270|||Y
5VPP|1|RA|U|270|||Z
5VPP|1|RA|G|271
*
5VPP|1|RA|C|366
5VPP|1|RA|G|370
*
5VPP|1|RA|G|271
5VPP|1|RA|C|366
*
5VPP|1|RA|G|370

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain RI

50S ribosomal protein L9