J3_5VPP_025

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CACGG*CCGGUAAG*CGAGG

Length

18 nucleotides

Bulged bases

5VPP|1|RA|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|RA|C|2789
5VPP|1|RA|A|2790
5VPP|1|RA|C|2791
5VPP|1|RA|G|2792
5VPP|1|RA|G|2793
*
5VPP|1|RA|C|2803
5VPP|1|RA|C|2804
5VPP|1|RA|G|2805
5VPP|1|RA|G|2807
5VPP|1|RA|U|2808
5VPP|1|RA|A|2809
5VPP|1|RA|A|2810
5VPP|1|RA|G|2811
*
5VPP|1|RA|C|2889
5VPP|1|RA|G|2891
5VPP|1|RA|A|2892
5VPP|1|RA|G|2893
5VPP|1|RA|G|2894

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RW

50S ribosomal protein L22