J3_5VPP_028

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_028 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1902

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5VPP|1|XA|G|46
5VPP|1|XA|C|47
*
5VPP|1|XA|G|361
5VPP|1|XA|G|362
5VPP|1|XA|A|363
5VPP|1|XA|A|364
5VPP|1|XA|U|365
5VPP|1|XA|C|366
5VPP|1|XA|U|367
*
5VPP|1|XA|A|393
5VPP|1|XA|G|394
5VPP|1|XA|C|395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16