J3_5VPP_063
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- ACGUGGCUACCU*AGC*GAUGU
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5VPP_063 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.1777
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5VPP|1|RA|A|56
5VPP|1|RA|C|57
5VPP|1|RA|G|58
5VPP|1|RA|U|59
5VPP|1|RA|G|60
5VPP|1|RA|G|61
5VPP|1|RA|C|62
5VPP|1|RA|U|63
5VPP|1|RA|A|64
5VPP|1|RA|C|65
5VPP|1|RA|C|66
5VPP|1|RA|U|67
*
5VPP|1|RA|A|74
5VPP|1|RA|G|75
5VPP|1|RA|C|76
*
5VPP|1|RA|G|110
5VPP|1|RA|A|111
5VPP|1|RA|U|112
5VPP|1|RA|G|113
5VPP|1|RA|U|114
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R2
- 50S ribosomal protein L29
- Chain R7
- 50S ribosomal protein L34
- Chain RX
- 50S ribosomal protein L23
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