J3_5VPP_067

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CCCAUAG*CG*UCGG

Length

13 nucleotides

Bulged bases

5VPP|1|RB|U|14, 5VPP|1|RB|C|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5VPP_067 not in the Motif Atlas

Homologous match to J3_7A0S_021

Geometric discrepancy: 0.3099

The information below is about J3_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47324.1

Basepair signature

cWW-F-F-tSS-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5VPP|1|RB|C|10
5VPP|1|RB|C|11
5VPP|1|RB|C|12
5VPP|1|RB|A|13
5VPP|1|RB|U|14
5VPP|1|RB|A|15
5VPP|1|RB|G|16
*
5VPP|1|RB|C|68
5VPP|1|RB|G|69
*
5VPP|1|RB|U|107
5VPP|1|RB|C|108
5VPP|1|RB|G|109
5VPP|1|RB|G|110

Current chains

Chain RB

5S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RS

50S ribosomal protein L18

Chain RZ

50S ribosomal protein L25