J3_5VPP_074

3D structure

PDB id

5VPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The 70S P-site tRNA SufA6 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CGC*GGACUGCC*GGAGGAAGGAG

Length

22 nucleotides

Bulged bases

5VPP|1|XA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5VPP|1|XA|C|1116
5VPP|1|XA|G|1117
5VPP|1|XA|C|1118
*
5VPP|1|XA|G|1155
5VPP|1|XA|G|1156
5VPP|1|XA|A|1157
5VPP|1|XA|C|1158
5VPP|1|XA|U|1159
5VPP|1|XA|G|1160
5VPP|1|XA|C|1161
5VPP|1|XA|C|1162
*
5VPP|1|XA|G|1174
5VPP|1|XA|G|1175
5VPP|1|XA|A|1176
5VPP|1|XA|G|1177
5VPP|1|XA|G|1178
5VPP|1|XA|A|1179
5VPP|1|XA|A|1180
5VPP|1|XA|G|1181
5VPP|1|XA|G|1182
5VPP|1|XA|A|1183
5VPP|1|XA|G|1184

Current chains

Chain XA

16S rRNA

Nearby chains

Chain QJ

30S ribosomal protein S10

Chain XB

30S ribosomal protein S2

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9

Chain XN

30S ribosomal protein S14 type Z