J3_5VPP_076
3D structure
- PDB id
- 5VPP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site tRNA SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.9 Å
Loop
- Sequence
- UUGG*CACUUCGUUCGG(1MG)GACGAAGGGGUCG*UA
- Length
- 32 nucleotides
- Bulged bases
- 5VPP|1|XV|1MG|38, 5VPP|1|XV|U|49
- QA status
- Modified nucleotides: 1MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5VPP|1|XV|U|7
5VPP|1|XV|U|8
5VPP|1|XV|G|9
5VPP|1|XV|G|10
*
5VPP|1|XV|C|26
5VPP|1|XV|A|27
5VPP|1|XV|C|28
5VPP|1|XV|U|29
5VPP|1|XV|U|30
5VPP|1|XV|C|31
5VPP|1|XV|G|32
5VPP|1|XV|U|33
5VPP|1|XV|U|34
5VPP|1|XV|C|35
5VPP|1|XV|G|36
5VPP|1|XV|G|37
5VPP|1|XV|1MG|38
5VPP|1|XV|G|39
5VPP|1|XV|A|40
5VPP|1|XV|C|41
5VPP|1|XV|G|42
5VPP|1|XV|A|43
5VPP|1|XV|A|44
5VPP|1|XV|G|45
5VPP|1|XV|G|46
5VPP|1|XV|G|47
5VPP|1|XV|G|48
5VPP|1|XV|U|49
5VPP|1|XV|C|50
5VPP|1|XV|G|51
*
5VPP|1|XV|U|67
5VPP|1|XV|A|68
Current chains
- Chain XV
- P-site tRNA SufA6
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XI
- 30S ribosomal protein S9
- Chain XK
- 30S ribosomal protein S11
- Chain XM
- 30S ribosomal protein S13
- Chain XX
- messenger RNA
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