3D structure

PDB id
5WDT (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GppNHp
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
5WDT|1|A|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5WDT_009 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1765
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

5WDT|1|A|C|2295
5WDT|1|A|U|2296
5WDT|1|A|A|2297
5WDT|1|A|A|2298
5WDT|1|A|U|2299
*
5WDT|1|A|A|2317
5WDT|1|A|G|2318
5WDT|1|A|G|2319
5WDT|1|A|U|2320
5WDT|1|A|U|2321
5WDT|1|A|A|2322
5WDT|1|A|G|2323
*
5WDT|1|A|C|2332
5WDT|1|A|A|2333
5WDT|1|A|U|2334
5WDT|1|A|A|2335
5WDT|1|A|A|2336
5WDT|1|A|G|2337

Current chains

Chain A
23S rRNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27
Chain v
Transfer RNA; tRNA

Coloring options:


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