J3_5WDT_028

3D structure

PDB id

5WDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5WDT|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WDT_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1132

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5WDT|1|A|G|297
5WDT|1|A|G|298
5WDT|1|A|A|299
5WDT|1|A|A|300
5WDT|1|A|G|301
*
5WDT|1|A|C|316
5WDT|1|A|G|317
5WDT|1|A|C|318
5WDT|1|A|G|319
5WDT|1|A|A|320
5WDT|1|A|U|321
5WDT|1|A|A|322
5WDT|1|A|C|323
5WDT|1|A|A|324
5WDT|1|A|G|325
*
5WDT|1|A|C|337
5WDT|1|A|G|338
5WDT|1|A|U|339
5WDT|1|A|A|340
5WDT|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24