J3_5WE4_003

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5WE4|1|A|U|686, 5WE4|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WE4_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0523

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5WE4|1|A|U|683
5WE4|1|A|G|684
5WE4|1|A|A|685
5WE4|1|A|U|686
5WE4|1|A|C|687
5WE4|1|A|U|688
5WE4|1|A|A|689
*
5WE4|1|A|U|773
5WE4|1|A|G|774
5WE4|1|A|G|775
*
5WE4|1|A|C|791
5WE4|1|A|A|792
5WE4|1|A|A|793
5WE4|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2