J3_5WE4_028

3D structure

PDB id

5WE4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu wt complex with GppNHp

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5WE4|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WE4_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0913

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5WE4|1|A|G|297
5WE4|1|A|G|298
5WE4|1|A|A|299
5WE4|1|A|A|300
5WE4|1|A|G|301
*
5WE4|1|A|C|316
5WE4|1|A|G|317
5WE4|1|A|C|318
5WE4|1|A|G|319
5WE4|1|A|A|320
5WE4|1|A|U|321
5WE4|1|A|A|322
5WE4|1|A|C|323
5WE4|1|A|A|324
5WE4|1|A|G|325
*
5WE4|1|A|C|337
5WE4|1|A|G|338
5WE4|1|A|U|339
5WE4|1|A|A|340
5WE4|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24