J3_5WE6_014

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WE6_014 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.156

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5WE6|1|a|G|46
5WE6|1|a|C|47
*
5WE6|1|a|G|361
5WE6|1|a|G|362
5WE6|1|a|A|363
5WE6|1|a|A|364
5WE6|1|a|U|365
5WE6|1|a|A|366
5WE6|1|a|U|367
*
5WE6|1|a|A|393
5WE6|1|a|G|394
5WE6|1|a|C|395

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain z

Elongation factor Tu 2