J3_5WF0_003

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5WF0|1|A|U|686, 5WF0|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WF0_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0582

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5WF0|1|A|U|683
5WF0|1|A|G|684
5WF0|1|A|A|685
5WF0|1|A|U|686
5WF0|1|A|C|687
5WF0|1|A|U|688
5WF0|1|A|A|689
*
5WF0|1|A|U|773
5WF0|1|A|G|774
5WF0|1|A|G|775
*
5WF0|1|A|C|791
5WF0|1|A|A|792
5WF0|1|A|A|793
5WF0|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2