J3_5WF0_010

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5WF0|1|A|A|2518, 5WF0|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WF0_010 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0717

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5WF0|1|A|C|2517
5WF0|1|A|A|2518
5WF0|1|A|U|2519
5WF0|1|A|C|2520
*
5WF0|1|A|G|2545
5WF0|1|A|U|2546
5WF0|1|A|A|2547
*
5WF0|1|A|U|2561
5WF0|1|A|U|2562
5WF0|1|A|U|2563
5WF0|1|A|A|2564
5WF0|1|A|A|2565
5WF0|1|A|A|2566
5WF0|1|A|G|2567

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14