J3_5WF0_029

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5WF0|1|A|U|321, 5WF0|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WF0_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0918

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5WF0|1|A|G|297
5WF0|1|A|G|298
5WF0|1|A|A|299
5WF0|1|A|A|300
5WF0|1|A|G|301
*
5WF0|1|A|C|316
5WF0|1|A|G|317
5WF0|1|A|C|318
5WF0|1|A|G|319
5WF0|1|A|A|320
5WF0|1|A|U|321
5WF0|1|A|A|322
5WF0|1|A|C|323
5WF0|1|A|A|324
5WF0|1|A|G|325
*
5WF0|1|A|C|337
5WF0|1|A|G|338
5WF0|1|A|U|339
5WF0|1|A|A|340
5WF0|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24