J3_5WFK_003

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5WFK|1|A|U|686, 5WFK|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFK_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0576

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5WFK|1|A|U|683
5WFK|1|A|G|684
5WFK|1|A|A|685
5WFK|1|A|U|686
5WFK|1|A|C|687
5WFK|1|A|U|688
5WFK|1|A|A|689
*
5WFK|1|A|U|773
5WFK|1|A|G|774
5WFK|1|A|G|775
*
5WFK|1|A|C|791
5WFK|1|A|A|792
5WFK|1|A|A|793
5WFK|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2