3D structure

PDB id
5WFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UG*UGUUG*CGCAA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5WFK_023 not in the Motif Atlas
Homologous match to J3_6CZR_024
Geometric discrepancy: 0.2194
The information below is about J3_6CZR_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04260.1
Basepair signature
cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5WFK|1|a|U|1073
5WFK|1|a|G|1074
*
5WFK|1|a|U|1083
5WFK|1|a|G|1084
5WFK|1|a|U|1085
5WFK|1|a|U|1086
5WFK|1|a|G|1087
*
5WFK|1|a|C|1098
5WFK|1|a|G|1099
5WFK|1|a|C|1100
5WFK|1|a|A|1101
5WFK|1|a|A|1102

Current chains

Chain a
16S rRNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain e
30S ribosomal protein S5
Chain u
30S ribosomal protein S21

Coloring options:


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