J3_5WFK_027

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5WFK|1|A|U|321, 5WFK|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFK_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0977

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5WFK|1|A|G|297
5WFK|1|A|G|298
5WFK|1|A|A|299
5WFK|1|A|A|300
5WFK|1|A|G|301
*
5WFK|1|A|C|316
5WFK|1|A|G|317
5WFK|1|A|C|318
5WFK|1|A|G|319
5WFK|1|A|A|320
5WFK|1|A|U|321
5WFK|1|A|A|322
5WFK|1|A|C|323
5WFK|1|A|A|324
5WFK|1|A|G|325
*
5WFK|1|A|C|337
5WFK|1|A|G|338
5WFK|1|A|U|339
5WFK|1|A|A|340
5WFK|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24