3D structure

PDB id
5WFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
5WFK|1|a|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5WFK_034 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1195
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5WFK|1|a|U|1116
5WFK|1|a|A|1117
5WFK|1|a|U|1118
*
5WFK|1|a|A|1155
5WFK|1|a|G|1156
5WFK|1|a|A|1157
5WFK|1|a|C|1158
5WFK|1|a|U|1159
5WFK|1|a|G|1160
5WFK|1|a|C|1161
*
5WFK|1|a|G|1175
5WFK|1|a|A|1176
5WFK|1|a|G|1177
5WFK|1|a|G|1178
5WFK|1|a|A|1179
5WFK|1|a|A|1180
5WFK|1|a|G|1181
5WFK|1|a|G|1182
5WFK|1|a|U|1183
5WFK|1|a|G|1184

Current chains

Chain a
16S rRNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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