J3_5WFS_003

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5WFS|1|A|U|686, 5WFS|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFS_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0532

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5WFS|1|A|U|683
5WFS|1|A|G|684
5WFS|1|A|A|685
5WFS|1|A|U|686
5WFS|1|A|C|687
5WFS|1|A|U|688
5WFS|1|A|A|689
*
5WFS|1|A|U|773
5WFS|1|A|G|774
5WFS|1|A|G|775
*
5WFS|1|A|C|791
5WFS|1|A|A|792
5WFS|1|A|A|793
5WFS|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2