J3_5WFS_004

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFS_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0556

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5WFS|1|A|C|698
5WFS|1|A|A|699
5WFS|1|A|G|700
*
5WFS|1|A|C|732
5WFS|1|A|G|733
5WFS|1|A|A|734
5WFS|1|A|A|735
5WFS|1|A|C|736
*
5WFS|1|A|G|760
5WFS|1|A|A|761
5WFS|1|A|U|762
5WFS|1|A|G|763

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2