J3_5WFS_027

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5WFS|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFS_027 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1432

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5WFS|1|A|G|297
5WFS|1|A|G|298
5WFS|1|A|A|299
5WFS|1|A|A|300
5WFS|1|A|G|301
*
5WFS|1|A|C|316
5WFS|1|A|G|317
5WFS|1|A|C|318
5WFS|1|A|G|319
5WFS|1|A|A|320
5WFS|1|A|U|321
5WFS|1|A|A|322
5WFS|1|A|C|323
5WFS|1|A|A|324
5WFS|1|A|G|325
*
5WFS|1|A|C|337
5WFS|1|A|G|338
5WFS|1|A|U|339
5WFS|1|A|A|340
5WFS|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24