J3_5WFS_036

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WFS_036 not in the Motif Atlas

Geometric match to J3_5J7L_001

Geometric discrepancy: 0.1884

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5WFS|1|a|G|46
5WFS|1|a|C|47
*
5WFS|1|a|G|361
5WFS|1|a|G|362
5WFS|1|a|A|363
5WFS|1|a|A|364
5WFS|1|a|U|365
5WFS|1|a|A|366
5WFS|1|a|U|367
*
5WFS|1|a|A|393
5WFS|1|a|G|394
5WFS|1|a|C|395

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain z

Elongation factor Tu 2