J3_5WIS_058
3D structure
- PDB id
- 5WIS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5WIS|1|1A|A|2400, 5WIS|1|1A|U|2402, 5WIS|1|1A|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5WIS_058 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0639
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5WIS|1|1A|G|2294
5WIS|1|1A|C|2295
5WIS|1|1A|C|2296
*
5WIS|1|1A|G|2396
5WIS|1|1A|C|2397
5WIS|1|1A|C|2398
5WIS|1|1A|U|2399
5WIS|1|1A|A|2400
5WIS|1|1A|G|2401
5WIS|1|1A|U|2402
5WIS|1|1A|G|2403
5WIS|1|1A|A|2404
5WIS|1|1A|A|2405
5WIS|1|1A|C|2406
5WIS|1|1A|C|2407
*
5WIS|1|1A|G|2433
5WIS|1|1A|A|2434
5WIS|1|1A|U|2435
5WIS|1|1A|C|2436
5WIS|1|1A|A|2437
5WIS|1|1A|A|2438
5WIS|1|1A|C|2439
Current chains
- Chain 1A
- 23S ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 11
- 50S ribosomal protein L28
- Chain 16
- 50S ribosomal protein L33
- Chain 18
- 50S ribosomal protein L35
- Chain 1P
- 50S ribosomal protein L15
- Chain 1y
- Transfer RNA; tRNA
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