J3_5WIT_006

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAGG*CCUUUAAAG*CAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|1A|G|1101
5WIT|1|1A|G|1102
5WIT|1|1A|A|1103
5WIT|1|1A|G|1104
5WIT|1|1A|G|1105
*
5WIT|1|1A|C|1125
5WIT|1|1A|C|1126
5WIT|1|1A|U|1127
5WIT|1|1A|U|1128
5WIT|1|1A|U|1129
5WIT|1|1A|A|1130
5WIT|1|1A|A|1131
5WIT|1|1A|A|1132
5WIT|1|1A|G|1133
*
5WIT|1|1A|C|1148
5WIT|1|1A|A|1149
5WIT|1|1A|C|1150

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36