J3_5WIT_040

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

5WIT|1|2A|G|2833, 5WIT|1|2A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WIT_040 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.083

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5WIT|1|2A|C|2814
5WIT|1|2A|C|2815
*
5WIT|1|2A|G|2831
5WIT|1|2A|U|2832
5WIT|1|2A|G|2833
5WIT|1|2A|G|2834
5WIT|1|2A|A|2835
5WIT|1|2A|U|2836
*
5WIT|1|2A|A|2882
5WIT|1|2A|A|2883
5WIT|1|2A|U|2884
5WIT|1|2A|C|2885
5WIT|1|2A|G|2886

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17