J3_5WIT_071

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCAGG*CCGGAGAG*UAGAAG

Length

20 nucleotides

Bulged bases

5WIT|1|2A|G|2334, 5WIT|1|2A|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WIT|1|2A|C|2295
5WIT|1|2A|U|2296
5WIT|1|2A|C|2297
5WIT|1|2A|A|2298
5WIT|1|2A|G|2299
5WIT|1|2A|G|2300
*
5WIT|1|2A|C|2316
5WIT|1|2A|C|2317
5WIT|1|2A|G|2318
5WIT|1|2A|G|2319
5WIT|1|2A|A|2320
5WIT|1|2A|G|2321
5WIT|1|2A|A|2322
5WIT|1|2A|G|2323
*
5WIT|1|2A|U|2332
5WIT|1|2A|A|2333
5WIT|1|2A|G|2334
5WIT|1|2A|A|2335
5WIT|1|2A|A|2336
5WIT|1|2A|G|2337

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18

Chain 2x

Transfer RNA; tRNA