J3_5WLC_002

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

5WLC|1|L1|C|934

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WLC_002 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.2851

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

5WLC|1|L1|A|881
5WLC|1|L1|U|882
5WLC|1|L1|C|883
5WLC|1|L1|A|884
*
5WLC|1|L1|U|928
5WLC|1|L1|A|929
5WLC|1|L1|A|930
5WLC|1|L1|C|931
5WLC|1|L1|U|932
5WLC|1|L1|A|933
5WLC|1|L1|C|934
5WLC|1|L1|U|935
5WLC|1|L1|G|936
*
5WLC|1|L1|C|943
5WLC|1|L1|A|944
5WLC|1|L1|U|945
5WLC|1|L1|U|946
5WLC|1|L1|U|947

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NG

rpS14_uS11

Chain NJ

Rrp5

Chain NK

Krr1