J3_5WLC_005

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACUG*CGG*CGAG

Length

12 nucleotides

Bulged bases

5WLC|1|L1|U|1473

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WLC|1|L1|C|1470
5WLC|1|L1|A|1471
5WLC|1|L1|C|1472
5WLC|1|L1|U|1473
5WLC|1|L1|G|1474
*
5WLC|1|L1|C|1533
5WLC|1|L1|G|1534
5WLC|1|L1|G|1540
*
5WLC|1|L1|C|1571
5WLC|1|L1|G|1572
5WLC|1|L1|A|1573
5WLC|1|L1|G|1574

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L3

rpS18_uS13

Chain L5

rpS5_uS7

Chain LJ

Utp15

Chain SK

Emg1

Chain ST

Nop14