J3_5WNP_009

3D structure

PDB id

5WNP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GGUGCC*GGAGCC

Length

16 nucleotides

Bulged bases

5WNP|1|A|A|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WNP_009 not in the Motif Atlas

Homologous match to J3_4LFB_006

Geometric discrepancy: 0.2386

The information below is about J3_4LFB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32857.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5WNP|1|A|G|1003|||A
5WNP|1|A|A|1004
5WNP|1|A|A|1005
5WNP|1|A|C|1006
*
5WNP|1|A|G|1023
5WNP|1|A|G|1024
5WNP|1|A|U|1025
5WNP|1|A|G|1026
5WNP|1|A|C|1027
5WNP|1|A|C|1028
*
5WNP|1|A|G|1033
5WNP|1|A|G|1034
5WNP|1|A|A|1035
5WNP|1|A|G|1036
5WNP|1|A|C|1037
5WNP|1|A|C|1038

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains