3D structure

PDB id
5WNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CGG*CUAG*CG
Length
9 nucleotides
Bulged bases
5WNT|1|A|A|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5WNT_002 not in the Motif Atlas
Homologous match to J3_5J7L_002
Geometric discrepancy: 0.1274
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

5WNT|1|A|C|586
5WNT|1|A|G|587
5WNT|1|A|G|588
*
5WNT|1|A|C|651
5WNT|1|A|U|652
5WNT|1|A|A|653
5WNT|1|A|G|654
*
5WNT|1|A|C|754
5WNT|1|A|G|755

Current chains

Chain A
16S Ribosomal RNA rRNA

Nearby chains

Chain H
RIBOSOMAL PROTEIN S8
Chain L
RIBOSOMAL PROTEIN S12
Chain O
RIBOSOMAL PROTEIN S15
Chain Q
RIBOSOMAL PROTEIN S17

Coloring options:


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