J3_5WNT_009

3D structure

PDB id

5WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GGUGCC*GGAGCC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5WNT_009 not in the Motif Atlas

Homologous match to J3_4LFB_006

Geometric discrepancy: 0.2571

The information below is about J3_4LFB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32857.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

5WNT|1|A|G|1003|||A
5WNT|1|A|A|1004
5WNT|1|A|A|1005
5WNT|1|A|C|1006
*
5WNT|1|A|G|1023
5WNT|1|A|G|1024
5WNT|1|A|U|1025
5WNT|1|A|G|1026
5WNT|1|A|C|1027
5WNT|1|A|C|1028
*
5WNT|1|A|G|1033
5WNT|1|A|G|1034
5WNT|1|A|A|1035
5WNT|1|A|G|1036
5WNT|1|A|C|1037
5WNT|1|A|C|1038

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains