J3_5XJC_001
3D structure
- PDB id
- 5XJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAU*ACGCAAAUUC*GGCCUUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 5XJC|1|F|C|79, 5XJC|1|F|C|81, 5XJC|1|F|A|84, 5XJC|1|F|U|85, 5XJC|1|F|U|86, 5XJC|1|H|U|15, 5XJC|1|H|U|17, 5XJC|1|H|U|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5XJC|1|F|C|55
5XJC|1|F|A|56
5XJC|1|F|U|57
*
5XJC|1|F|A|78
5XJC|1|F|C|79
5XJC|1|F|G|80
5XJC|1|F|C|81
5XJC|1|F|A|82
5XJC|1|F|A|83
5XJC|1|F|A|84
5XJC|1|F|U|85
5XJC|1|F|U|86
5XJC|1|F|C|87
*
5XJC|1|H|G|11
5XJC|1|H|G|12
5XJC|1|H|C|13
5XJC|1|H|C|14
5XJC|1|H|U|15
5XJC|1|H|U|16
5XJC|1|H|U|17
5XJC|1|H|U|18
5XJC|1|H|G|19
5XJC|1|H|G|20
Current chains
- Chain F
- U6 snRNA
- Chain H
- Homo sapiens small nuclear RNA (U2) gene
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain G
- pre-mRNA
- Chain J
- Crooked neck-like protein 1
- Chain L
- Cell division cycle 5-like protein
- Chain M
- Pre-mRNA-splicing factor SYF2
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- SNW domain-containing protein 1
- Chain T
- Pleiotropic regulator 1
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