J3_5XYM_003

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

5XYM|1|A|U|321, 5XYM|1|A|G|461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|G|320
5XYM|1|A|U|321
5XYM|1|A|G|322
*
5XYM|1|A|C|460
5XYM|1|A|G|461
5XYM|1|A|A|462
5XYM|1|A|G|463
5XYM|1|A|U|464
5XYM|1|A|A|465
5XYM|1|A|G|466
*
5XYM|1|A|U|490
5XYM|1|A|G|491
5XYM|1|A|A|492
5XYM|1|A|A|493
5XYM|1|A|U|494
5XYM|1|A|C|495

Current chains

Chain A

23S RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28