J3_5XYM_004

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

5XYM|1|A|U|804, 5XYM|1|A|A|910

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYM_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0927

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5XYM|1|A|U|801
5XYM|1|A|G|802
5XYM|1|A|A|803
5XYM|1|A|U|804
5XYM|1|A|C|805
5XYM|1|A|U|806
5XYM|1|A|A|807
*
5XYM|1|A|U|891
5XYM|1|A|A|892
5XYM|1|A|G|893
*
5XYM|1|A|C|909
5XYM|1|A|A|910
5XYM|1|A|A|911
5XYM|1|A|A|912

Current chains

Chain A

23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2