J3_5XYM_005

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYM_005 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0669

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5XYM|1|A|C|816
5XYM|1|A|A|817
5XYM|1|A|G|818
*
5XYM|1|A|C|850
5XYM|1|A|G|851
5XYM|1|A|A|852
5XYM|1|A|A|853
5XYM|1|A|C|854
*
5XYM|1|A|G|878
5XYM|1|A|A|879
5XYM|1|A|U|880
5XYM|1|A|G|881

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2