J3_5XYM_009

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GUAC*GGG*CAUAGCCGCGAAUUC

Length

22 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|G|1667
5XYM|1|A|U|1668
5XYM|1|A|A|1669
5XYM|1|A|C|1670
*
5XYM|1|A|G|1689
5XYM|1|A|G|1690
5XYM|1|A|G|1691
*
5XYM|1|A|C|1750
5XYM|1|A|A|1751
5XYM|1|A|U|1752
5XYM|1|A|A|1753
5XYM|1|A|G|1754
5XYM|1|A|C|1755
5XYM|1|A|C|1756
5XYM|1|A|G|1757
5XYM|1|A|C|1765
5XYM|1|A|G|1766
5XYM|1|A|A|1767
5XYM|1|A|A|1768
5XYM|1|A|U|1769
5XYM|1|A|U|1770
5XYM|1|A|C|1771

Current chains

Chain A

23S RNA

Nearby chains