J3_5XYM_011
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CUCAA*UGUUGAG*CACAAG
- Length
- 18 nucleotides
- Bulged bases
- 5XYM|1|A|C|2561, 5XYM|1|A|A|2563
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5XYM_011 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.4153
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5XYM|1|A|C|2522
5XYM|1|A|U|2523
5XYM|1|A|C|2524
5XYM|1|A|A|2525
5XYM|1|A|A|2526
*
5XYM|1|A|U|2544
5XYM|1|A|G|2545
5XYM|1|A|U|2546
5XYM|1|A|U|2547
5XYM|1|A|G|2548
5XYM|1|A|A|2549
5XYM|1|A|G|2550
*
5XYM|1|A|C|2559
5XYM|1|A|A|2560
5XYM|1|A|C|2561
5XYM|1|A|A|2562
5XYM|1|A|A|2563
5XYM|1|A|G|2564
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L5
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
Coloring options: