J3_5XYM_013

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CCC*GAUUGAU*AACG

Length

14 nucleotides

Bulged bases

5XYM|1|A|U|3057, 5XYM|1|A|A|3059

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5XYM|1|A|C|3038
5XYM|1|A|C|3039
5XYM|1|A|C|3040
*
5XYM|1|A|G|3054
5XYM|1|A|A|3055
5XYM|1|A|U|3056
5XYM|1|A|U|3057
5XYM|1|A|G|3058
5XYM|1|A|A|3059
5XYM|1|A|U|3060
*
5XYM|1|A|A|3106
5XYM|1|A|A|3107
5XYM|1|A|C|3108
5XYM|1|A|G|3110

Current chains

Chain A

23S RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17