J3_5XYM_017

3D structure

PDB id

5XYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5XYM_017 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.381

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

5XYM|1|A|U|1649
5XYM|1|A|G|1650
5XYM|1|A|A|1651
5XYM|1|A|C|1652
5XYM|1|A|G|1653
*
5XYM|1|A|C|1787
5XYM|1|A|C|1788
*
5XYM|1|A|G|1791
5XYM|1|A|A|1792
5XYM|1|A|A|1793
5XYM|1|A|A|1794
5XYM|1|A|A|1795
5XYM|1|A|G|1796

Current chains

Chain A

23S RNA

Nearby chains

Chain C

50S ribosomal protein L2