J3_5XYM_018
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- GCC*GACUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5XYM|1|A|U|2617, 5XYM|1|A|A|2653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5XYM_018 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1056
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5XYM|1|A|G|2509
5XYM|1|A|C|2510
5XYM|1|A|C|2511
*
5XYM|1|A|G|2611
5XYM|1|A|A|2612
5XYM|1|A|C|2613
5XYM|1|A|U|2614
5XYM|1|A|A|2615
5XYM|1|A|G|2616
5XYM|1|A|U|2617
5XYM|1|A|G|2618
5XYM|1|A|A|2619
5XYM|1|A|U|2620
5XYM|1|A|C|2621
5XYM|1|A|C|2622
*
5XYM|1|A|G|2648
5XYM|1|A|C|2649
5XYM|1|A|U|2650
5XYM|1|A|C|2651
5XYM|1|A|A|2652
5XYM|1|A|A|2653
5XYM|1|A|C|2654
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 2
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
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